Dear Bioconductor admin,
I am Truong Nguyen
I am working on data analysis for microarray data, but I could not install into my R studio,
Could you please help me solve my issue that How to install "maEndToEnd" into R studio in my Macbook?
Thank you very much Sincerely
Here is the problem report from my screen:
> library(devtools) > library(remotes) > remotes::install_github("b-klaus/maEndToEnd", ref="master") Downloading GitHub repo b-klaus/maEndToEnd@master Skipping 42 packages ahead of CRAN: Biobase, oligoClasses, ArrayExpress, oligo, arrayQualityMetrics, limma, topGO, ReactomePA, clusterProfiler, geneplotter, genefilter, Rgraphviz, BiocGenerics, IRanges, GenomicRanges, SummarizedExperiment, Biostrings, affyio, S4Vectors, AnnotationDbi, affxparser, preprocessCore, zlibbioc, affy, affyPLM, beadarray, vsn, graph, DOSE, enrichplot, graphite, GOSemSim, qvalue, annotate, GenomeInfoDb, XVector, DelayedArray, BiocParallel, gcrma, BeadDataPackR, illuminaio, fgsea ✔ checking for file ‘/private/var/folders/cy/rq7bxr0d7zx2vdh77jwng_4h0000gn/T/RtmpnI7Ct0/remotes19294101919d/b-klaus-maEndToEnd-2e5cae5/DESCRIPTION’ (411ms) ─ preparing ‘maEndToEnd’: ✔ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘maEndToEnd_1.99.6.tar.gz’ * installing *source* package ‘maEndToEnd’ ... ** using staged installation ** inst ** help No man pages found in package ‘maEndToEnd’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘arrayQualityMetrics’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdtools/libs/gdtools.so': dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdtools/libs/gdtools.so, 6): Library not loaded: /opt/X11/lib/libcairo.2.dylib Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdtools/libs/gdtools.so Reason: image not found Error : package ‘arrayQualityMetrics’ could not be loaded Error: loading failed Execution halted ERROR: loading failed * removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/maEndToEnd’ Error: Failed to install 'maEndToEnd' from GitHub: (converted from warning) installation of package ‘/var/folders/cy/rq7bxr0d7zx2vdh77jwng_4h0000gn/T//RtmpnI7Ct0/file19294dfefbc2/maEndToEnd_1.99.6.tar.gz’ had non-zero exit status