I ran the following code to create and filter my "data" object:
data <- squareCounts(input, hg19.param, width=bin.size, filter=1)
keep <- aveLogCPM(asDGEList(data)) > 0
data <- data[keep,]
When I tried normalizing the filtered data using the following command I get the error below
data <- normOffsets(data, type="loess", se.out=TRUE)
Error in loessFit (log (mat [, x] + cont.cor.scaled [x]), ab, …) : unused argument (type = “loess” )
I tried running it on the initial data object and get the same error. Any ideas about how I can troubleshoot this error?