Question: Eliminate redundancy in biomaRt (2.38.0) query
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gravatar for olibee1315
6 weeks ago by
olibee13150
olibee13150 wrote:

I am using biomaRt (2.38.0) to retrieve genome data from Ensembl. When using the web interface to do this, there is a check-box option to limit a query to unique results only. This eliminates redundancy in the output.

Is there any way to implement the 'unique results only' option using biomaRt (2.38.0)?

biomart ensembl • 72 views
ADD COMMENTlink modified 6 weeks ago by Mike Smith3.9k • written 6 weeks ago by olibee13150
Answer: Eliminate redundancy in biomaRt (2.38.0) query
0
gravatar for Mike Smith
6 weeks ago by
Mike Smith3.9k
EMBL Heidelberg / de.NBI
Mike Smith3.9k wrote:

The getBM() function has the argument uniqueRows which toggles this behaviour. However the default value is TRUE so it should do this unless explicitly asked not to. Do you have an example query where it isn't working correctly?

ADD COMMENTlink modified 6 weeks ago • written 6 weeks ago by Mike Smith3.9k
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