I am a student of SISG Module 17. We learned about the TopmedPipeline functions during the module. This is an extremely useful package but I have only been able to run this through the DataStage and not my own computer. I am simply not able to install TopmedPipeline.
https://cran.rstudio.com/bin/windows/Rtools/ Installing package into ‘C:/Users/winst/Documents/R/win-library/3.6’ (as ‘lib’ is unspecified) Warning in install.packages : package ‘topmedpipeline’ is not available (for R version 3.6.0)