Question: SeqVarData Error sample.id in sampleData does not match GDS file
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gravatar for winstondunnmd
3 months ago by
winstondunnmd0 wrote:

Illumina did my WES and returned very complex and bizzare sample.id like "SampleCU-18" and "Sample24" despite I supplied them with simple 3 digit code 018, 024. When I ran SeqVarData: seqData <- SeqVarData(gds, sampleData=annot) it returned the following error:

Error in SeqVarData(gds, sampleData = annot) : sample.id in sampleData does not match GDS file

I did make sure the sample.id in annot match exactly.

Does it need to be sorted? How do I sort a gds file based on sample.id? Can I rename the sample.id to something simple like 018 and 024 to avoid error?

seqvardata sample.id • 70 views
ADD COMMENTlink written 3 months ago by winstondunnmd0
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