Good day to everyone
My name is Kgopotso Phakwago, and I am a research fellow at the University of Pretoria in South Africa. My research aims at evaluating defense-related genes or pathways associated with a specific fungal plant-pathogen (Fusarium circinatum) responses across different resistance or susceptible pine species. I am currently using WGCNA to generate heat-maps for visualizing the relationship between modules (clusters). I was successful in generating heat-maps within each host but cannot generate heat-maps between samples (host A vs host B). If possible, my question is can WGCNA be used for generating heat-maps between samples (in my case, four different hosts)?
your assistance will be highly appreciated
Kind regards, K. Phakwago