Hi, I have used Deseq2 packages for months but today when I tried to install the package, using BiocManager::install("DESeqDataSet")
Bioconductor version 3.9 (BiocManager 1.30.4), R 3.6.1 (2019-07-05) Installing package(s) 'DESeqDataSet' Update old packages: 'sys' Update all/some/none? [a/s/n]: a There is a binary version available but the source version is later: binary source needs_compilation sys 3.2 3.3 TRUE Binaries will be installed trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.6/sys_3.2.zip' Content type 'application/zip' length 59724 bytes (58 KB) downloaded 58 KB package ‘sys’ successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\tranl\AppData\Local\Temp\RtmpItqrwM\downloaded_packages ****Warning message: package ‘DESeqDataSet’ is not available (for R version 3.6.1)**
Why doesn't R think that the package is available?
R version 3.6.1 (2019-07-05) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 17763) Matrix products: default Random number generation: RNG: Mersenne-Twister Normal: Inversion Sample: Rounding locale:  LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252  LC_MONETARY=English_United States.1252  LC_NUMERIC=C  LC_TIME=English_United States.1252 attached base packages:  stats graphics grDevices utils datasets methods  base loaded via a namespace (and not attached):  BiocManager_1.30.4 compiler_3.6.1 Matrix_1.2-17  tools_3.6.1 parallel_3.6.1 curl_4.0  remotes_2.1.0 grid_3.6.1 data.table_1.12.2  BiocParallel_1.18.1 lattice_0.20-38
Thanks for your help.