Question: DESeq2 heatmap and rlog transformed values
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gravatar for Morris
23 days ago by
Morris0
Morris0 wrote:

Hello everyone, I have a question about values generated with rlog

We use the implemented transformation rlog to show HeatMap with the most variable genes among groups/samples, and my question is: are this genes, lets say the top 1000 gene significant in terms of p-value? If I want to see which genes are more expressed between groups can I use the output of the HeatMap?

or it's better to use the final analysis from DESeq2 without any further transformation?

Thank you

deseq2 • 106 views
ADD COMMENTlink modified 23 days ago by Michael Love25k • written 23 days ago by Morris0
Answer: DESeq2 heatmap and rlog transformed values
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