Question: gene Isoforms quantification using RNA-seq data
0
gravatar for angel.campos
3 months ago by
angel.campos0 wrote:

Which are the available packages in Bioconductor to quantify gene isoforms?

TIA

ADD COMMENTlink modified 3 months ago by swbarnes2340 • written 3 months ago by angel.campos0

RSEM is best option you can go for

ADD REPLYlink written 3 months ago by chudar.chudar0

Salmon is very good, rsem is also good but very slow. The above comment could be misleading.

ADD REPLYlink modified 3 months ago • written 3 months ago by chris86390
Answer: gene Isoforms quantification using RNA-seq data
1
gravatar for swbarnes2
3 months ago by
swbarnes2340
swbarnes2340 wrote:

I think Salmon and Kallisto will quantify isoforms as well, but I don't think any of those are available through bioconductor

ADD COMMENTlink written 3 months ago by swbarnes2340
Answer: gene Isoforms quantification using RNA-seq data
0
gravatar for chudar.chudar
3 months ago by
chudar.chudar0 wrote:

RSEM

ADD COMMENTlink written 3 months ago by chudar.chudar0
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