gene Isoforms quantification using RNA-seq data

Question: gene Isoforms quantification using RNA-seq data

3 months ago by

angel.campos • 0 wrote:

Which are the available packages in Bioconductor to quantify gene isoforms?

TIA

rna-seq gene isoform quantification • 101 views

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modified 3 months ago by swbarnes2 • 340 • written 3 months ago by angel.campos • 0

RSEM is best option you can go for

ADD REPLY • link written 3 months ago by chudar.chudar • 0

Salmon is very good, rsem is also good but very slow. The above comment could be misleading.

ADD REPLY • link modified 3 months ago • written 3 months ago by chris86 • 390

Answer: gene Isoforms quantification using RNA-seq data

3 months ago by

swbarnes2 • 340

swbarnes2 • 340 wrote:

I think Salmon and Kallisto will quantify isoforms as well, but I don't think any of those are available through bioconductor

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Answer: gene Isoforms quantification using RNA-seq data

3 months ago by

chudar.chudar • 0 wrote:

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