genbankr problem while parsing gb file
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jeyp • 0
@jeyp-21784
Last seen 4.6 years ago

Hello,

I'm experiencing problems while trying to parse the following annotation file: https://www.ncbi.nlm.nih.gov/nuccore/M73260.1

> genbankr::readGenBank("M73260.1.gb")
genes not available for all CDS ranges, using internal grouping ids
Error in getListElement(x, i, ...) : 
  GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
In addition: Warning messages:
1: In make_feat_gr(str = rngstr, chr = chr, ats = c(type = type, attrs),  :
  Incomplete feature annotation detected. Omitting feature at <11565..12297
2: In make_feat_gr(str = rngstr, chr = chr, ats = c(type = type, attrs),  :
  Incomplete feature annotation detected. Omitting feature at <25819..26484

Is there something wrong with this file or should I report a bug ?

Thanks

genbankr • 628 views
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