Question: How to identify all SRPs with GTEx bigwig files?
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gravatar for hyp15
5 weeks ago by
hyp150
hyp150 wrote:

In my previous conversation (https://support.bioconductor.org/p/123799/), I got helped a lot as to how to retrieve all bigwig files in an SRP. I just learned that GTEx bigwig files are distributed through multiple SRPs. Is there any way to locate all the SRPs that have GTEx bigwig files?

Thank you very much in advance! Recount is a great tool; It helps researchers save a lot of time!

Best, HJ

recount • 50 views
ADD COMMENTlink written 5 weeks ago by hyp150

Hi,

Can you rephrase your question please? I’ didn’t understand what you were asking.

Like, what do you mean by learning that GTEx BigWig files are distributed with multiple SRPs? Is that from recount or some code you ran or from another website/tool? Are you talking about GTEx v6 RNA-seq samples or v8 or both?

Best, Leo

ADD REPLYlink written 5 weeks ago by Leonardo Collado Torres690
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