Question: Help with CNOGpro
gravatar for Neu.S
5 days ago by
Neu.S10 wrote:

Hello, I want help to execute a copy number variation study My codes are below. Please help me to resolve the error.

library(CNOGpro) library(seqinr) data<-read.table("hitsfile", sep="\t",header=FALSE) library(biofiles) library(reutils) gbfile <- reutils::efetch("CP000480", "nuccore", rettype = "gbwithparts", retmode = "text") gbkfile <- biofiles::gbRecord(gbfile) study1 <- CNOGpro(hitsfile, gbkfile, windowlength = 100, name ="S1")

Error Reading contents of GenBank file... Error in readLines(con = gbkfile) : 'con' is not a connection

Thanks a lot!

software error • 28 views
ADD COMMENTlink written 5 days ago by Neu.S10

This forum is intended to support Bioconductor packages. Since CNOGpro isn't a Bioconductor package, this isn't really the appropriate place to be asking for help.

ADD REPLYlink written 4 days ago by Mike Smith3.9k
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