Question: Legend color mix-up in grouped Gviz plot
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gravatar for Robert
5 weeks ago by
Robert10
Robert10 wrote:

I have a GRanges object with two metadata columns, which I plot in the same Gviz plot using the groups argument:

library(Gviz)

gr <- GRanges(seqnames = "chrI", ranges = IRanges(start = 1:6, width = 1), strand = "*",
              fw = c(0, 0, 0, 1, 2, 1.5), rev = c(1.75, 2.25, 1, 0, 0, 0))

dt1 <- DataTrack(range = gr, groups = c("fw", "rev"), col = c("red", "blue"), type = "h")

at <- GenomeAxisTrack()

plotTracks(trackList = list(at, dt1), from = 1, to = 7)

Img1

When I change the order of the groups and col vector elements, the colors in the legend get mixed up.

dt2 <- DataTrack(range = gr, groups = c("rev", "fw"), col = c("blue", "red"), type = "h")

plotTracks(trackList = list(at, dt2), from = 1, to = 7)

enter image description here

Is this a bug or did I miss something about how the groups and col arguments are used?

gviz • 43 views
ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by Robert10

Hi, thanks for pointing that out. It should be fixed in both (release and development) versions in next few days.

ADD REPLYlink written 4 weeks ago by Robert Ivanek640
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