Couldnt find getAE and ae2bioc?
Entering edit mode
kodherif • 0
Last seen 2.0 years ago

Hey im working on jupyter notebook R, i should use bioconductor packages for my finishing thesis, but i have problem. I tried

ArrayExpress packages installed, is it?

I couldnt show you, these are screen shots.

its turkish text, that means couldnt find getAE object and function.

online pic upload

Same things happened for ae2bioc. How i install and library these packages and functions, thank you.

getAE ae2bioc bioconductor packages library • 253 views
Entering edit mode
Mike Smith ★ 5.2k
Last seen 12 minutes ago
EMBL Heidelberg / de.NBI

Your second screenshot suggests that ArrayExpress is failing to load because you have an incompatible version of the rlang package and it hasn't updated this as it is already loaded.

I would suggest running BiocManager::valid() to check you have all the appropriate versions - it will give you the commands to run if things are mismatched.

Note that I don't know how persistent these changes are when using Jupyter Notebooks. It may be sufficient to make installing ArrayExpress the first step in your workflow, before any other packages have been loaded.


Login before adding your answer.

Traffic: 497 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6