.cool to .txt cooler2bedpe does not work HiCompare
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@cchakraborty-22057
Last seen 2.1 years ago

Did anyone try to convert .cool to .bedpe files using HiCompare's cooler2bedpe function. It does not work for me-

> library(HiCcompare)
> ?cooler2bedpe
No documentation for ‘cooler2bedpe’ in specified packages and libraries:

Please help.

HiCompare HiC cool • 155 views
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@kevin
Last seen 23 minutes ago
Republic of Ireland

There is an updated manual page entry on the GitHub repository: https://github.com/dozmorovlab/HiCcompare/blob/master/man/cooler2bedpe.Rd

The details there should help you to convert your file.

Kevin

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