I am trying to access some unpublished data from GEO for which I know the GSE number and the access token.
I would like to download it. However, I couldn't download it using
I tried both using just the GSE and with a modified version with the token at the end
gse <- getGEO("GSE01010101") gse <- getGEO("GSE01010101&?token=randomletters")
In both cases the response I get is:
Error in open.connection(x, "rb") : HTTP error 404.
I haven't found anything online or in the help pages of GEOquery, but I might have missed it. Or maybe there is another solution outside GEOquery package
How can I download the data using GEOquery?