Question: Is it possible to run gseDO for mouse 'org.Mm.eg.db'
0
gravatar for raianbio
6 weeks ago by
raianbio0
raianbio0 wrote:

Hello.

I finally got running gseDO() from the DOSE package but, I just realised I can't or I don't know how to change the organism from human to Mouse. You can see the following script and the error.

y <- gseDO(geneList, nPerm = 500, minGSSize = 15, pvalueCutoff = 0.5, pAdjustMethod = "BH", OrgDb="org.Mm.eg.db", verbose = FALSE)

Error in gseDO(geneList, nPerm = 500, minGSSize = 15, pvalueCutoff = 0.5, : unused argument (OrgDb = "org.Mm.eg.db")

clusterprofiler • 116 views
ADD COMMENTlink written 6 weeks ago by raianbio0
Answer: C: Is it possible to run gseDO for mouse 'org.Mm.eg.db'
0
gravatar for Guangchuang Yu
5 weeks ago by
Guangchuang Yu1.1k
China/Guangzhou/Southern Medical University
Guangchuang Yu1.1k wrote:

No. We may extend it to support mouse in future. But currently Disease Ontology only supports human.

ADD COMMENTlink written 5 weeks ago by Guangchuang Yu1.1k
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