Question: DiffBind with paired-end ChIP-seq data
4 weeks ago by
shen_ • 0
shen_ • 0 wrote:
I tried to count reads around peak set based on paired-end ChIP-seq data. But I don't want to get a consensus peak set. So I add "peaks=NULL" according to the document of DiffBind.
Here is my code:
> data$config$singleEnd <- F > data <- dba.count(data,peaks=NULL,bUseSummarizeOverlaps=T) Error in dba.count(data, peaks = NULL, bUseSummarizeOverlaps = T) : DBA object must contains only counts
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