Entering edit mode
Hi
I have gene expression raw counts like this
A1 B1 C1 D1 E1 F1
A2M 511 1623 665 208 553 469
AADAT 34 137 372 7 52 124
ABCB1 119 114 123 22 25 89
ABCB11 27 186 200 27 30 49
ABCC2 1 10 21 1 8 3
For each patients I also have some characteristics like percent of infiltrating immune cells (IC)
and tumor cells (TCs)
, etc like below
> head(meta)
IC PD.L1 TC TILs TILs.group
A1 3 1 3 0 2
B1 2 1 0 0 1
C1 2 1 0 0 2
D1 0 0 0 0 2
E1 1 0 0 1 3
F1 0 0 0 0 1
>
I want differentially expressed genes, but I can not figure out how to let all of these meta data in my design
Can you help me please?
Thank you