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lizzid
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@lizzid-22177
Last seen 4.4 years ago
After callings res() in DESeq2, I see a column for lfcSE. I've read in multiple places that this is the standard error the of the log2 fold change and read in other places that it is not. I'm wondering what this column is for and how it is calculated exactly.
My apologies. I meant that I called the results() function and see a column for lfcSE which is seen in the edit of my post. The vignette says that lfcSE is the standard error of log2foldchange but I'm wondering what samples and variables that are being taken into account when calculating lfcSE.
As with your question about size factors, SE of beta (LFC) is detailed in our 2014 paper. Please check their first for method details.