After callings res() in DESeq2, I see a column for lfcSE. I've read in multiple places that this is the standard error the of the log2 fold change and read in other places that it is not. I'm wondering what this column is for and how it is calculated exactly.
Can you provide your exact code? There isn't a
res function in DESeq2, and there isn't a column
lfcShrink in the results table. I need to know specifically what you are referring to. Note that there is a lot of details about this in the vignette, so that would be a good place for you to start.