Unable to install RBGL in Bioconductor 3.10 release
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@mjsteinbaugh
Last seen 9 months ago
28-7 Therapeutics

Hi all,

I'm hitting an RBGL installation issue on RHEL 7 for Bioconductor 3.10, in case anybody else see this. I filed a related issue over on GitHub: https://github.com/Bioconductor/RBGL/issues/2

BiocManager::install("RBGL")
Bioconductor version 3.10 (BiocManager 1.30.9), R 3.6.1 (2019-07-05)
Installing package(s) 'RBGL'
trying URL 'https://bioconductor.org/packages/3.10/bioc/src/contrib/RBGL_1.61.0.tar.gz'
Content type 'application/x-gzip' length 2303478 bytes (2.2 MB)
==================================================
downloaded 2.2 MB

* installing *source* package ‘RBGL’ ...
** using staged installation
checking R package BH ... no
configure: error: R package BH not found.
ERROR: configuration failed for package ‘RBGL’
* removing ‘/data00/R/site-library/3.6/RBGL’
* restoring previous ‘/data00/R/site-library/3.6/RBGL’
Warning in install.packages(...) :
  installation of package ‘RBGL’ had non-zero exit status
rbgl bh • 289 views
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OK I posted a temporary fix on GitHub, but the automatic configuration needs to be updated to support RHEL 7.

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@martin-morgan-1513
Last seen 25 minutes ago
United States

This is being addressed in the github issue https://github.com/Bioconductor/RBGL/issues/2 and an updated version should be available later today.

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