I have been using trackViewer package in R to make plots of RNAseq, ChIPseq and ATACseq data. We have now some methylation data and I was trying to make some lolliplots to show differential methylation levels in genes/promoters.
I have been following the vignettes, but I am really confused with the section dedicated to lolliplots for methylation data, and have been unable to make it work. My knowledge in Bioinformatics is basic and it's the first time we have methylation data.
What type of input data do I need for these plots? We would like to show basically differentially methylated regions (DMRs) in two conditions (cell types). I would appreciate some help.