Can anyone help me with following issue? My version of R is 3.6.1 and Rtools are installed as well. I tried to manually install "hgu95acdf" package, but it seems that it did not work out well. I am using Windows 7 64bit.
**Loading required package: affy
Loading required package: BiocGenerics Loading req**uired package: parallel Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:parallel’: clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.**** > library(affy) > affy.data <- ReadAffy() > eset.mas5 = mas5(affy.data) background correction: mas PM/MM correction : mas expression values: mas background correcting...installing the source package ‘hgu95acdf’ trying URL 'https://bioconductor.org/packages/3.10/data/annotation/src/contrib/hgu95acdf_2.18.0.tar.gz' Content type 'application/x-gzip' length 1331364 bytes (1.3 MB) downloaded 1.3 MB * installing *source* package 'hgu95acdf' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'AnnotationDbi::tail' by 'utils::tail' when loading 'hgu95acdf' Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'hgu95acdf' ** help *** installing help indices converting help for package 'hgu95acdf' finding HTML links ... готово geometry html hgu95acdf html hgu95adim html ** building package indices ** testing if installed package can be loaded from temporary location *** arch - i386 Error in system2(if (nzchar(arch)) file.path(R.home(), "bin", arch, "Rterm.exe") else file.path(R.home("bin"), : '"C:/PROGRA~1/R/R-36~1.1/bin/i386/Rterm.exe"' not found * removing 'C:/Program Files/R/R-3.6.1/library/hgu95acdf' The downloaded source packages are in ‘C:\Users\Lenovo\AppData\Local\Temp\Rtmp8GaBSs\downloaded_packages’ Error in getCdfInfo(object) : Could not obtain CDF environment, problems encountered: Specified environment does not contain HG_U95A Library - package hgu95acdf not installed Library - package hgu95acdf not installed In addition: Warning message: In install.packages(cdfname, lib = lib, repos = repositories(), : installation of package ‘hgu95acdf’ had non-zero exit status