Question: Gviz coverage and sashimi not from BAM file
gravatar for mario.keller.1988
24 days ago by
mario.keller.19880 wrote:

Hi, I was wondering if there is a way to plot coverage and sashimi plots without the need for a BAM file. This reason why I"m asking this is that I want to incorporate Gviz in a Shiny application on a server where I have limited space. I was wondering if it is somehow possible to provide the coverage as an Rle List and the splice junctions as GRanges (like it they are provided for the sashimiFilter parameter) with an extra column containing their abundance.

Thanks in advance. Mario

gviz • 71 views
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