siamcat install problems
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@gaiotransposon-22414
Last seen 3.2 years ago

Hi,

I am aware that you guys are working on a soon to be released siamcat version. However, as I am impatient I am trying to work with the 1.6 version, but I am getting this error even when using your example data:

install.packages("~/Downloads/SIAMCAT_1.6.0.tgz", repos = NULL, type = .Platform$pkgType)
library(SIAMCAT)

data("feat_crc_zeller", package="SIAMCAT")
data("meta_crc_zeller", package="SIAMCAT")

label <- create.label(meta=meta.crc.zeller,
                         label='Group', case='CRC')

siamcat <- siamcat(feat=feat.crc.zeller,
           label=label,
           meta=meta.crc.zeller)

Getting the error: Error in validObject(.Object) : invalid class “otutable” object: superclass "vectorOR_Vector" not defined in the environment of the object's class

Could you please tell me what's going on?

I also tried siamcat 1.4, getting the same error message as above.

When installing Siamcat 1.7: Error in create.label(meta = meta.crc.zeller, label = "Group", case = "CRC") : lazy-load database '/Users/12705859/Library/R/3.6/library/SIAMCAT/data/Rdata.rdb' is corrupt

My R version: R version 3.6.1 (2019-07-05)

thank you

siamcat • 322 views
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