As we are trying to build a pipeline in KNIME, I was wondering if it is at all possible to dynamically allocate a string to the design when building a DESeq. To clarify:
In dds <- DESeqDataSetFromMatrix(countData = counts, colData = sample, design= ~ condition)
we would like to allow other users to change the design parameter to for example "genotype", assuming that there is a column "genotype" in the sample metadata. There are ways to in KNIME to dynamically change input, but we do not get it to work in this specific case. Is it at all possible? Many thanks in advance for your input.
Kind regards, Bas