Error : Results must have the same dimensions
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@phshimaasherif-22566
Last seen 2.7 years ago

Good evening ,

query <- GDCquery (project = "TARGET-NBL",
data.category = "Transcriptome Profiling",
data.type = "Gene Expression Quantification",
workflow.type = "HTSeq - Counts")


, and I found the following error :

“Error: Results must have the same dimensions”

TCGAbiolinks GDC dataset • 507 views
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Hello,

The problem comes from these two files which are associated with more than one entity ID.

I need to check with GDC if there is an error in their database or if I need to consider this case. Once I have the answer I'll be able to handle the problem.

It is also weird som cases have two files now: link

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Hello Tiago,

Thank you for contacting the GDC Help Desk.

For a file like HTSeq Counts, there should only be one aliquot linked. I have created a ticket for this error.

Thank you for catching this error. This fix will hopefully be deployed with our next data release.

Best regards,

Sean Burke, Ph.D. Scientific Support Analyst

Ticket Details --------------------------------- Ticket ID: 12116

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Thank you for illustration.

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Can I download the other NBL transcriptomic data except the cases associated to these files? As I need it urgently :( If there is any way or other packages to skip these files or overcome this error please advise. Thank you