boxplot Error in Bioconductor
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l154359 • 0
@l154359-22598
Last seen 16 months ago

Query : boxplot(split(geneExpression[which(geneAnnotation$SYMBOL=="PAXB"),], sampleInfo$group), ylab="PAXB",xlab="group")

Error: Error in plot.window(xlim = xlim, ylim = ylim, log = log, yaxs = pars$yaxs): need finite 'ylim' values

boxplot bioconductor R error • 343 views
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It is rather hard to try to reproduce this without knowing what and how you created geneExpression (what package did you use? - what is the class structure?) and if you are using R's default boxplot or a package specific function. It would also be helpful to have your sessionInfo( ) - Just on a guess, I would say there might be NA values that makes the ylim infinite - You might try explicitly setting a ylim value.

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