Issue with ChAMP DMP.GUI
1
0
Entering edit mode
cherlyn.t • 0
@cherlynt-13245
Last seen 17 months ago

Hi,

there is an error with the delimiting of the DMPtable within DMP.GUI. Please advise about this issue. Thank you.

Below is the error: DataTables warning: table id=DataTablesTable3 - Requested unknown parameter '10' for row 0. For more information about this error, please see http://datatables.net/tn/4

Session Info: R version 3.5.3 (2019-03-11) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.6 LTS

Matrix products: default BLAS: /usr/local/lib/R/lib/libRblas.so LAPACK: /usr/local/lib/R/lib/libRlapack.so

locale: [1] LCCTYPE=enGB.UTF-8 LCNUMERIC=C LCTIME=enGB.UTF-8 LCCOLLATE=enGB.UTF-8 LCMONETARY=enGB.UTF-8 LCMESSAGES=enGB.UTF-8 LCPAPER=enGB.UTF-8
[8] LC
NAME=C LCADDRESS=C LCTELEPHONE=C LCMEASUREMENT=enGB.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] splines stats4 parallel stats graphics grDevices utils datasets methods base

other attached packages: [1] doRNG1.7.1 rngtools1.4 pkgmaker0.27 registry0.5-1
[5] IlluminaHumanMethylationEPICanno.ilm10b4.hg190.6.0 shiny1.4.0 ChAMP2.12.4 IlluminaHumanMethylationEPICmanifest0.3.0
[9] Illumina450ProbeVariants.db1.18.0 DMRcate1.18.0 DMRcatedata1.18.0 DSS2.30.1
[13] bsseq1.18.0 FEM3.10.0 graph1.60.0 org.Hs.eg.db3.7.0
[17] impute1.56.0 igraph1.2.4.2 corrplot0.84 marray1.60.0
[21] limma3.38.3 Matrix1.2-18 AnnotationDbi1.44.0 ChAMPdata2.14.1
[25] minfi1.28.4 bumphunter1.24.5 locfit1.5-9.1 iterators1.0.12
[29] foreach1.4.7 Biostrings2.50.2 XVector0.22.0 SummarizedExperiment1.12.0
[33] DelayedArray0.8.0 BiocParallel1.16.6 matrixStats0.55.0 Biobase2.42.0
[37] GenomicRanges1.34.0 GenomeInfoDb1.18.2 IRanges2.16.0 S4Vectors0.20.1
[41] BiocGenerics_0.28.0

loaded via a namespace (and not attached): [1] rtracklayer1.42.2 R.methodsS31.7.1 wateRmelon1.26.0
[4] tidyr
1.0.0 ggplot23.2.1 acepack1.4.1
[7] bit640.9-7 knitr1.26 R.utils2.9.2
[10] data.table
1.12.6 rpart4.1-15 RCurl1.95-4.12
[13] GEOquery2.50.5 AnnotationFilter1.6.0 doParallel1.0.15
[16] GenomicFeatures
1.34.8 preprocessCore1.44.0 RSQLite2.1.4
[19] combinat0.0-8 bit1.1-14 xml21.2.2
[22] httpuv
1.5.2 assertthat0.2.1 IlluminaHumanMethylation450kmanifest0.4.0
[25] viridis0.5.1 isva1.9 xfun0.11
[28] hms
0.5.2 evaluate0.14 missMethyl1.16.0
[31] DNAcopy1.56.0 promises1.1.0 progress1.2.2
[34] dendextend
1.13.2 DBI1.0.0 htmlwidgets1.5.1
[37] reshape0.8.8 purrr0.3.3 ROC1.58.0
[40] crosstalk
1.0.0 dplyr0.8.3 backports1.1.5
[43] permute0.9-5 annotate1.60.1 biomaRt2.38.0
[46] vctrs
0.2.0 ensembldb2.6.8 withr2.1.2
[49] globaltest5.36.0 Gviz1.26.5 BSgenome1.50.0
[52] checkmate
1.9.4 GenomicAlignments1.18.1 prettyunits1.0.2
[55] mclust5.4.5 cluster2.1.0 RPMM1.25
[58] lazyeval
0.2.2 crayon1.3.4 genefilter1.64.0
[61] pkgconfig2.0.3 nlme3.1-142 ProtGenerics1.14.0
[64] nnet
7.3-12 rlang0.4.2 lifecycle0.1.0
[67] nleqslv3.3.2 affyio1.52.0 dichromat2.0-0
[70] IlluminaHumanMethylation450kanno.ilmn12.hg19
0.6.0 base642.0 Rhdf5lib1.4.3
[73] base64enc0.1-3 geneLenDataBase1.18.0 viridisLite0.3.0
[76] bitops
1.0-6 R.oo1.23.0 KernSmooth2.23-16
[79] blob1.2.0 DelayedMatrixStats1.4.0 stringr1.4.0
[82] qvalue
2.14.1 nor1mix1.3-0 readr1.3.1
[85] scales1.1.0 memoise1.1.0 magrittr1.5
[88] plyr
1.8.4 bibtex0.4.2 zlibbioc1.28.0
[91] compiler3.5.3 RColorBrewer1.1-2 illuminaio0.24.0
[94] clue
0.3-57 Rsamtools1.34.1 affy1.60.0
[97] JADE2.0-2 IlluminaHumanMethylationEPICanno.ilm10b2.hg190.6.0 htmlTable1.13.3
[100] Formula
1.2-3 MASS7.3-51.4 mgcv1.8-31
[103] tidyselect0.2.5 stringi1.4.3 yaml2.2.0
[106] askpass
1.1 latticeExtra0.6-28 grid3.5.3
[109] VariantAnnotation1.28.13 tools3.5.3 ruv0.9.7.1
[112] rstudioapi
0.10 foreign0.8-72 gridExtra2.3
[115] farver2.0.1 digest0.6.23 BiocManager1.30.10
[118] quadprog
1.5-8 Rcpp1.0.3 siggenes1.56.0
[121] later1.0.0 httr1.4.1 rsconnect0.8.16
[124] biovizBase
1.30.1 lumi2.34.0 colorspace1.4-1
[127] XML3.98-1.20 statmod1.4.33 kpmt0.1.0
[130] multtest
2.38.0 shinythemes1.1.2 plotly4.9.1
[133] xtable1.8-4 jsonlite1.6 zeallot0.1.0
[136] R6
2.4.1 Hmisc4.3-0 pillar1.4.2
[139] htmltools0.4.0 mime0.7 glue1.3.1
[142] fastmap
1.0.1 beanplot1.2 codetools0.2-16
[145] lattice0.20-38 tibble2.1.3 sva3.30.1
[148] curl
4.3 BiasedUrn1.07 gtools3.8.1
[151] GO.db3.7.0 openssl1.4.1 survival3.1-8
[154] rmarkdown
2.0 methylumi2.28.0 fastICA1.2-2
[157] munsell0.5.0 rhdf52.26.2 GenomeInfoDbData1.2.0
[160] goseq
1.34.1 HDF5Array1.10.1 reshape21.4.3
[163] gtable_0.3.0

ChAMP champ methylation EPIC • 135 views
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Entering edit mode
Yuan Tian ▴ 90
@yuan-tian-9598
Last seen 17 months ago

Hi:

You are using version 2.12.4, which is too old. Please update to latest version, then see if things works.

Best Tian 在 2020年1月17日 +0000 PM4:45,cherlyn.t [bioc] noreply@bioconductor.org,写道:

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