Entering edit mode
mictadlo
▴
10
@mictadlo-10885
Last seen 4.2 years ago
Hi all, I ran BRAKER2 annotation pipeline and now I would like to change the ids from e.g. g65212 to AT1G01010.1, AT1G01020.1, AT1G01030.1.... Is there a script available to change IDs in an existing GFF3 file?
NbV1Ch01 TAIR10 gene 5928 8737 . - . ID=AT1G01020;Note=protein_coding_gene;Name=AT1G01020
NbV1Ch01 TAIR10 mRNA 5928 8737 . - . ID=AT1G01020.1;Parent=AT1G01020;Name=AT1G01020.1;Index=1
NbV1Ch01 TAIR10 protein 6915 8666 . - . ID=AT1G01020.1-Protein;Name=AT1G01020.1;Derives_from=AT1G01020.1
NbV1Ch01 TAIR10 five_prime_UTR 8667 8737 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 CDS 8571 8666 . - 0 Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 8571 8737 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 CDS 8417 8464 . - 0 Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 8417 8464 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 CDS 8236 8325 . - 0 Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 8236 8325 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 CDS 7942 7987 . - 0 Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 7942 7987 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 CDS 7762 7835 . - 2 Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 7762 7835 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 CDS 7564 7649 . - 0 Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 7564 7649 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 CDS 7384 7450 . - 1 Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 7384 7450 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 CDS 7157 7232 . - 0 Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 7157 7232 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 CDS 6915 7069 . - 2 Parent=AT1G01020.1
NbV1Ch01 TAIR10 three_prime_UTR 6437 6914 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 6437 7069 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 three_prime_UTR 5928 6263 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 exon 5928 6263 . - . Parent=AT1G01020.1
NbV1Ch01 TAIR10 mRNA 6790 8737 . - . ID=AT1G01020.2;Parent=AT1G01020;Name=AT1G01020.2;Index=1
NbV1Ch01 TAIR10 protein 7315 8666 . - . ID=AT1G01020.2-Protein;Name=AT1G01020.2;Derives_from=AT1G01020.2
NbV1Ch01 TAIR10 five_prime_UTR 8667 8737 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 CDS 8571 8666 . - 0 Parent=AT1G01020.2
NbV1Ch01 TAIR10 exon 8571 8737 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 CDS 8417 8464 . - 0 Parent=AT1G01020.2
NbV1Ch01 TAIR10 exon 8417 8464 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 CDS 8236 8325 . - 0 Parent=AT1G01020.2
NbV1Ch01 TAIR10 exon 8236 8325 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 CDS 7942 7987 . - 0 Parent=AT1G01020.2
NbV1Ch01 TAIR10 exon 7942 7987 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 CDS 7762 7835 . - 2 Parent=AT1G01020.2
NbV1Ch01 TAIR10 exon 7762 7835 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 CDS 7564 7649 . - 0 Parent=AT1G01020.2
NbV1Ch01 TAIR10 exon 7564 7649 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 CDS 7315 7450 . - 1 Parent=AT1G01020.2
NbV1Ch01 TAIR10 three_prime_UTR 7157 7314 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 exon 7157 7450 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 three_prime_UTR 6790 7069 . - . Parent=AT1G01020.2
NbV1Ch01 TAIR10 exon 6790 7069 . - . Parent=AT1G01020.2
Thank you in advance,