Are there a method to download atac-sec data from TCGA in a MultiAssayExperiment object?
I'm not aware of ATAC-seq data generated by the TCGA project, can you point to any? I might be able to advise then on how to integrate it with the MultiAssayExperiment objects provided by curatedTCGAData.
You are right! there are only BAM controlled files. Sorry!
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