I did differential exon usage analysis for my data using DEXSeq. I have two experimental conditions and the plot generated by plotDEXSeq() function is a little weird. Can you help me in understanding the plot since it shows some incomplete lines between the exons. What do these incomplete lines refer to and whether/how should I get rid of them?
plotDEXSeq(dxr, "Mlp60A", legend=TRUE,displayTranscripts=TRUE, splicing=TRUE, cex.axis=1.2, cex=1.3, lwd=2 )
I followed the tutorial and generated the results. Here I am showing one gene- Any help/explanation is highly appreciated. Thank you.