I am using
rtracklayer package to access rs ID and restriction enzyme sites in a genomic interval so that I can make genotyping decisions.
library(rtracklayer) session <- browserSession() genome(session) <- "mm9" trackNames(session) ## list the track names # for Restr Enzymes use "cutters" query <- ucscTableQuery(session,"cutters" , GRangesForUCSCGenome("mm9", "chr7", IRanges(149627713, 149630315 )))
This yeilds a mesage saying
Error in normArgTrack(track, trackids) : Unknown track: cutters
I read that "Note that not all tables are available as tracks.". So I am guessing "cutters" are available as a table but not as a tack. So how to I know which track to query so that I can get cutter table.