Joint pathway Analysis using both gene and metabolite data sets
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@emisecherre-23089
Last seen 14 months ago

Hello !

I'm looking for an API or package which can perform a joint pathway analysis using a list of genes and a list of metabolites at least. My aim would be to find pathways which include as many items of my lists as possible.

Thanks in advance !

data integration gene metabolite • 272 views
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@james-w-macdonald-5106
Last seen 9 hours ago
United States

The mogsa package comes to mind.

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@kevin
Last seen 7 hours ago
Republic of Ireland

MetaboAnalyst is another that comes to mind, but this is a web interface.

Kevin

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svlachavas ▴ 780
@svlachavas-7225
Last seen 1 day ago
Germany/Heidelberg/German Cancer Resear…

You could also try MOFA:

https://bioconductor.org/packages/release/bioc/html/MOFA.html

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@emisecherre-23089
Last seen 14 months ago

okay i'll try them, thank you all !

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