Joint pathway Analysis using both gene and metabolite data sets
4
0
Entering edit mode
@emisecherre-23089
Last seen 15 months ago

Hello !

I'm looking for an API or package which can perform a joint pathway analysis using a list of genes and a list of metabolites at least. My aim would be to find pathways which include as many items of my lists as possible.

Thanks in advance !

data integration gene metabolite • 294 views
ADD COMMENT
1
Entering edit mode
@james-w-macdonald-5106
Last seen 9 days ago
United States

The mogsa package comes to mind.

ADD COMMENT
1
Entering edit mode
@kevin
Last seen 11 hours ago
South Africa

MetaboAnalyst is another that comes to mind, but this is a web interface.

Kevin

ADD COMMENT
0
Entering edit mode
svlachavas ▴ 780
@svlachavas-7225
Last seen 2 days ago
Germany/Heidelberg/German Cancer Resear…

You could also try MOFA:

https://bioconductor.org/packages/release/bioc/html/MOFA.html

ADD COMMENT
0
Entering edit mode
@emisecherre-23089
Last seen 15 months ago

okay i'll try them, thank you all !

ADD COMMENT

Login before adding your answer.

Traffic: 438 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6