I've written some code which has been working for a while now... To my surprise, today I noticed it is failing....
library(GenomeInfoDb) ## GenomeInfoDb_1.22.0 ## Rversion 3.6.2 Seqinfo(genome="hg19") Error in FUN(genome = names(SUPPORTED_UCSC_GENOMES)[idx], circ_seqs = supported_genome$circ_seqs, : cannot map the following UCSC seqlevel(s) to an NCBI seqlevel: chr1_jh636052_fix, chrX_jh806600_fix, chrX_jh806587_fix, ....
Any thoughts on how to proceed?
Thank you very much for your time on this,
R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Catalina 10.15.3 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib locale:  en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages:  stats4 parallel stats graphics grDevices utils datasets  methods base other attached packages:  GenomeInfoDb_1.22.0 IRanges_2.20.2 S4Vectors_0.24.3  BiocGenerics_0.32.0 loaded via a namespace (and not attached):  BiocManager_1.30.10 compiler_3.6.2 tools_3.6.2  GenomeInfoDbData_1.2.2 RCurl_1.98-1.1 bitops_1.0-6