Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.3 (2020-02-29)
Installing package(s) 'airway'
installing the source package ‘airway’
essai de l'URL 'https://bioconductor.org/packages/3.10/data/experiment/src/contrib/airway_1.6.0.tar.gz'
Content type 'application/x-gzip' length 24226867 bytes (23.1 MB)
downloaded 23.1 MB
Warning: package incorrect 'C:\Users\xxxxx'
Warning: package incorrect 'xxxxxx\AppData\Local\Temp\RtmpGQ1B7u/downloaded_packages/airway_1.6.0.tar.gz'
Erreur : ERREUR : aucun package spécifié
The downloaded source packages are in
Old packages: 'tibble'
Update all/some/none? [a/s/n]:
There is a binary version available but the source version is later:
binary source needs_compilation
tibble 2.1.3 3.0.0 TRUE
Binaries will be installed
essai de l'URL 'https://cran.rstudio.com/bin/windows/contrib/3.6/tibble_2.1.3.zip'
Content type 'application/zip' length 337382 bytes (329 KB)
downloaded 329 KB
package ‘tibble’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
In install.packages(...) :
installation of package ‘airway’ had non-zero exit status
and how xxxxx is split in two. R is not reacting well to a (temporary) file path with spaces in it. You could try to set an environment variable TMPDIR pointing to a location without a space, although I'm not sure whether that is enough. I think you could also tackle this in two steps -- download the airway package
Ok thank you very much.
As you suggested, I created a session without space: it helps but not for the tibble problem
By creating a session, I managed to install all package I needed from biocManager. But for this I should not install ggplot2 (that install tibble) before.
If ggplot2 is intalled before, It is impossible to install anything from biocManager.