I am trying to build a weighted network using WGCNA. While reading their paper (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-9-559#Sec1), I found they have used TOM for interconnectedness calculation. When I checked the TOM paper (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-22) I found that generalised TOM worked better than TOM for the unweighted network. I was just wondering if there is a way I can apply GTOM on my weighted network? Has anyone done it before? If yes, does it perform better for the weighted network as well? Is there some example code on how to implement that within WGCNA. Thanks very much for the help.