How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
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@hassebossenbroek-23193
Last seen 22 months ago

Hi,

I've performed gene ontology analysis with GOseq using the standard ontologies, as well as using KEGG and Reactome. When using the default ontologies or KEGG, the function getgo() can be used to identify the differentially expressed genes in each enriched pathway. However, getgo() does not support Reactome, so I'm having trouble finding out which differentially expressed genes drive the enrichment of the Reactome pathways. Can anyone help?

Many thanks, Hasse

goseq go rna-seq • 247 views