I am working on a large scale project which needs generation of missende variants an subsequent conversion of RefSeq data to its referring chromosomal position. I am currently retrieving the RefSeq sequence in R using biomaRt and create a .txt file that I am then uploading separately to mutalyzer's batch position converter. The resulting file looks like this:
However, I was wondering if there is a more direct way of getting this data? Or is there a command line to for R to upload data to mutalyzer?
Thanks so much for your help!