DESeq2 library problem
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bahall5 • 0
@bahall5-23316
Last seen 4.0 years ago

library("DESeq2") Error: package or namespace load failed for ‘DESeq2’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘latticeExtra’

Receiving this error message please help. Tried install.packages("latticeExtra") and then got this....

install.packages("latticeExtra") Installing package into ‘C:/Users/brook/OneDrive/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified) Warning message: package ‘latticeExtra’ is not available (for R version 3.5.3)

R deseq2 • 631 views
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@mikelove
Last seen 5 hours ago
United States

I’m not sure why you would have any missing packages if you’ve installed DESeq2, but you’ll need to reinstall this and any other dependencies manually.

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I am also confused why they're missing since I thought DESeq2 was installed. Is R version 3.5.3 acceptable or do I need 3.6? Thanks for your response.

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You may have an easier time by updating your software and trying again, but strictly the answer is that you can use any version of R going back to 3.0.

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