I am just trying the "enrichplot" R package for gene set enrichment analysis (GSEA) and I am new to this. My input data are primary hits from a genome-wide siRNA library screening and I have a gene list. I created a vector from my genes (have tried both gene symbols and Entrez gene ID numbers) and when I run the package pipeline, all I get from all kinds of plot functions, are the "example plots" described for the package instead of my own data. I think I am missing something here and I really appreciate it if someone could give me some beginner's details about how this package works wrt data input formatting.
Many Thanks, Hamid