News:Bioconductor 3.11 OrgDb and TxDb packages now available
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@kaylainterdonato-17327
Last seen 17 hours ago
United States

Hello Bioconductor community,

Since releasing the 3.11.0 versions of the db0 packages, we have added in more recent GO information. Therefore a newer 3.11.1 version of db0s are now available (arabidopsis.db0 is now at version 3.11.2).

The new OrgDbs and TxDbs for Bioconductor 3.11 are now available.

The new OrgDbs are:

  • GO.db_3.11.0.tar.gz
  • org.Ag.eg.db_3.11.0.tar.gz
  • org.At.tair.db_3.11.0.tar.gz
  • org.Bt.eg.db_3.11.0.tar.gz
  • org.Ce.eg.db_3.11.0.tar.gz
  • org.Cf.eg.db_3.11.0.tar.gz
  • org.Dm.eg.db_3.11.0.tar.gz
  • org.Dr.eg.db_3.11.0.tar.gz
  • org.EcK12.eg.db_3.11.0.tar.gz
  • org.EcSakai.eg.db_3.11.0.tar.gz
  • org.Gg.eg.db_3.11.0.tar.gz
  • org.Hs.eg.db_3.11.0.tar.gz
  • org.Mm.eg.db_3.11.0.tar.gz
  • org.Mmu.eg.db_3.11.0.tar.gz
  • org.Pf.plasmo.db_3.11.0.tar.gz
  • org.Pt.eg.db_3.11.0.tar.gz
  • org.Rn.eg.db_3.11.0.tar.gz
  • org.Sc.sgd.db_3.11.0.tar.gz
  • org.Ss.eg.db_3.11.0.tar.gz
  • org.Xl.eg.db_3.11.0.tar.gz
  • PFAM.db_3.11.0.tar.gz

The new TxDbs are:

  • TxDb.Btaurus.UCSC.bosTau8.refGene_3.11.0.tar.gz
  • TxDb.Celegans.UCSC.ce11.ensGene_3.11.0.tar.gz
  • TxDb.Cfamiliaris.UCSC.canFam3.refGene_3.11.0.tar.gz
  • TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.11.0.tar.gz
  • TxDb.Ggallus.UCSC.galGal4.refGene_3.11.0.tar.gz
  • TxDb.Ggallus.UCSC.galGal5.refGene_3.11.0.tar.gz
  • TxDb.Mmulatta.UCSC.rheMac3.refGene_3.11.0.tar.gz
  • TxDb.Mmulatta.UCSC.rheMac8.refGene_3.11.0.tar.gz
  • TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.11.0.tar.gz
  • TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.11.0.tar.gz
  • TxDb.Rnorvegicus.UCSC.rn5.refGene_3.11.0.tar.gz
  • TxDb.Sscrofa.UCSC.susScr11.refGene_3.11.0.tar.gz
  • TxDb.Sscrofa.UCSC.susScr3.refGene_3.11.0.tar.gz

Thank you!

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