News:ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
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Johannes Rainer ★ 1.9k
@johannes-rainer-6987
Last seen 4 weeks ago
Italy

Dear all,

ensembldb EnsDb annotation databases for all species from Ensembl release 100 have been added to AnnotationHub:

> library(AnnotationHub)
> ah <- AnnotationHub()
snapshotDate(): 2020-04-27
> query(ah, c("EnsDb", "v100"))
AnnotationHub with 217 records
# snapshotDate(): 2020-04-27
# $dataprovider: Ensembl
# $species: Zonotrichia albicollis, Xiphophorus maculatus, Xiphophorus couch...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
#   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
#   rdatapath, sourceurl, sourcetype 
# retrieve records with, e.g., 'object[["AH79600"]]' 

            title                                         
  AH79600 | Ensembl 100 EnsDb for Anser brachyrhynchus    
  AH79601 | Ensembl 100 EnsDb for Astatotilapia calliptera
  ...       ...                                           
  AH79815 | Ensembl 100 EnsDb for Xenopus tropicalis      
  AH79816 | Ensembl 100 EnsDb for Zonotrichia albicollis  

cheers, jo

ensembl annotation ensembldb News • 160 views
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