Entering edit mode
Dear all,
ensembldb
EnsDb
annotation databases for all species from Ensembl release 100 have been added to AnnotationHub
:
> library(AnnotationHub)
> ah <- AnnotationHub()
snapshotDate(): 2020-04-27
> query(ah, c("EnsDb", "v100"))
AnnotationHub with 217 records
# snapshotDate(): 2020-04-27
# $dataprovider: Ensembl
# $species: Zonotrichia albicollis, Xiphophorus maculatus, Xiphophorus couch...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
# coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
# rdatapath, sourceurl, sourcetype
# retrieve records with, e.g., 'object[["AH79600"]]'
title
AH79600 | Ensembl 100 EnsDb for Anser brachyrhynchus
AH79601 | Ensembl 100 EnsDb for Astatotilapia calliptera
... ...
AH79815 | Ensembl 100 EnsDb for Xenopus tropicalis
AH79816 | Ensembl 100 EnsDb for Zonotrichia albicollis
cheers, jo