Hello Sir, I am using it for non-model organisms.
1) I have a set of differentially expressed genes, plus the go term related to genes. 2 ) The command in R in need to use is: goseq(pwf, genome, id, gene2cat = Null) I understand that for gene2cat argument I need to mention my list of genes with their go term.Correct me if I am wrong. For pwf= I need to use nullp(DEgenes, genome, id, bias.data=NULL), however what should I use for genome and id here, and for bias.data (or can i skip genome and id part). I know length of each gene, can that be used for bias.data
3)Lastly for genome, id again, what should I mention.
I am guessing I can skip the genome and id part here and just provide two: argument pwf and gene2cat.
Thanking you in advance for your help.