the accessory contains the R script , the test data, the word report, you just need to revise your setwd in the R script.
the script used the pseudo.counts for external analysis, and I also see pseudo.counts numeric matrix of normalized pseudo-counts in your edger user guide.
the word report in the accessory describe it more clearly
Which kind of data in edger can be used for external analysis, such as cox model, heatmap, gene scatter plot difference between groups. Urgent for help.
is there a detaied comparison of your edger with wilcox