Problems loading latest Version of S4Vectors

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ianrector97 • 0

@ianrector97-24017

Last seen 3.7 years ago

I need to install the latest version of S4Vectors in order for the affycoretools package to work. I tried to use the latest installation instructions on the Bioconductor website, but when I check the version of S4Vectors it still shows 0.26.1 rather than the latest version 0.27.12. I install and use the 'devel' package as per the instructions on the Bioconductor site. Any idea as to what could be going wrong?

affy • 1.0k views

ADD COMMENT • link 3.7 years ago ianrector97 • 0

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Please show the transcript of what you did to install S4Vectors (i.e. exact command + its complete output). Thanks!

ADD REPLY • link 3.7 years ago Hervé Pagès 16k

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if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("S4Vectors")

I then checked packageVersion("S4Vectors") and still got version 0.26.1.

ADD REPLY • link updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by ianrector97 • 0

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This code is just taken form this link https://bioconductor.org/packages/devel/bioc/html/S4Vectors.html which is the experimental version of the Bioconductor package.

ADD REPLY • link 3.7 years ago ianrector97 • 0

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Please also show the output of the command, and your sessionInfo()

ADD REPLY • link 3.7 years ago Kevin Blighe ★ 3.9k

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Yep, we need the full transcript of what you did. As explained earlier, that means exact commands + their complete output. Thanks!

ADD REPLY • link 3.7 years ago Hervé Pagès 16k

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