Is the ExpressionSet class deprecated? If it is, what are the ramifications of this?
- Are new packages barred from using ExpressionSet?
- Will existing packages that use ExpressionSet be forced to move to SummarizedExperiment? If so, when?
- Often deprecation means the removal of support. If ExpressionSet is deprecated will support be removed? If so, when?
- Is SummarizedExperiment the replacement? Is SummarizedExperiment a superset of ExpressionSet with all ExpressionSet features available?