tcga and geo train and validation sets
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linouhao ▴ 10
@linouhao-15901
Last seen 12 months ago

hi, I have know I should use vst and rlog data for cox model in deseq2 analysis, but if I want to use geo data to validate my model, can I directly apply the model to my geo data, or should I scale data both in geo and tcga before build and validate my model? thanks a lot

deseq2 normalization • 188 views
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@mikelove
Last seen 18 hours ago
United States

I’m sorry but I can’t help you here. These aren’t DESeq2 related software questions.

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linouhao, could you also (in the future) not ask the same question in 2 locations like this? - You had already asked here ( https://support.bioconductor.org/p/133615/#133682 ), where I had taken time to respond, more or less adopting a similar stance as Michael.

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