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leehami7407
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@leehami7407-24156
Last seen 3.6 years ago
Hello, I am trying to analyze CAGE data for human brain using CAGEfightR
However, when I tried to run TSSs <- assignTxType(TSSs, txModels=txdb)
I get an error message Error: seqlengths(object) not identical to seqlengths(txModels)
My TSSs is
Width Count Percent Total 325205 100.0% =1 291608 89.7% =10 31726 9.8% =100 1871 0.6% =1000 0 0.0%
Could I get a help for this?
Thank you,
Looks like the information about chromosome names and length does not match between your TSSs and txdb object. You can check what is going on with
seqinfo(TSSs)andseqinfo(txdb)